不同风化程度凝灰岩表生细菌群落结构与功能比较
作者:
作者单位:

1.南京信息工程大学;2.蚌埠医学院;3.南京农业大学

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中图分类号:

Q93

基金项目:

国家自然科学基金面上项目(41977040、42077288、42273079)


Differences in Structure and Functional Potential Between the Altered Tuff and the Adjacent Soil Based on 16S rRNA gene MiSeq Sequencing-A Case Study
Author:
Affiliation:

1.Nanjing University of Information Science &2.Technology;3.Nanjing University of Information Science & Technology;4.amp;5.Bengbu Medical College;6.Nanjing Agricultural University

Fund Project:

The National Natural Science Foundation of China (General Program, Key Program, Major Research Plan)

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    摘要:

    细菌在矿物风化、元素地球化学循环和土壤形成过程中起重要作用。然而目前关于不同风化程度凝灰岩表生细菌群落结构与功能的研究鲜见报道。本研究利用高通量测序技术、Biolog EcoPlate检测法结合生物信息学分析手段比较研究了江西省抚州市东乡县低风化(LR)和高风化凝灰岩(MR)以及附近红壤(SS)样品表生细菌群落alpha-多样性、群落结构与功能的差异。结果表明,随着凝灰岩风化程度的加剧,细菌群落独特OTU数目、Chao1指数以及微生物碳利用率和代谢多样性香农指数逐渐增高。Acidobacteria(相对丰度占比17.8-40.7%)、Actinobacteria(9.2-29.2%)和Proteobacteria(18.8-34.6%)是该生境中最优势的菌门。随着风化程度的加剧Acidobacteria相对丰度越来越高而Actinobacteria和Alphaproteobacteria相对丰度逐渐降低。岩石样品pH、有机质(OM)含量以及有效态P、K和Ca的含量解释了凝灰岩表生细菌99%的群落结构变异。PICRUSt2对细菌群落功能预测结果表明,三组样品中编码碳酸苷酶(CA)、鞭毛合成和有机酸产生功能基因相对丰度的排序为SS>MR>LR,而LR中产铁载体相关功能基因相对丰度最高。综上,随着风化程度的加剧凝灰岩表生细菌群落alpha多样性随之升高,群落结构发生显著变化,表生细菌群落可能同时通过多种方式风化凝灰岩;且微生物群落对于不同种类碳源具有不同的优先利用模式。研究结果进一步丰富了凝灰岩风化形成红壤过程中微生物群落结构与功能的变迁规律。

    Abstract:

    Bacteria play an important role in mineral weathering, elemental geochemical cycling, and soil formation. However, there are currently few reports on the structure and function of bacterial communities inhabiting surface of tuffs with different degrees of weathering. The less (LR) and more (MR) altered rock samples and the adjacent red soil samples (SS) from Dongxiang County, Fuzhou, Jiangxi province (China) were collected to compare the differences in diversity, structure and ecological functions of bacterial communities inhabiting rock (soil) surfaces, by applying the high-throughput sequencing of partial bacterial 16S rRNA genes, a metabolic profiling technique (BIOLOG ECO plates), and bioinformatics analysis. It was found that as the weathering degree of the tuff intensified, the number of unique OTUs and the Chao1 index of bacterial communities, as well as microbial carbon utilization and metabolic diversity Shannon index, gradually increased. Acidobacterium (with relative abundance of 17.8-40.7%), Actinobacteria (9.2-29.2%), and Proteobacteria (18.8-34.6%) are the most dominant phyla in these habitats. As the weathering degree of the tuff intensified, the relative abundance of Acidobacteria increased, while the relative abundance of Actinobacteria and Alphaproteobacterium decreased. The pH and contents of organic matter (OM) as well as available P, K, and Ca of rock (or soil) samples explained 99% of the community structure variation of tuff (or soil) surface bacterial communities. The prediction results of bacterial community function by PICRUSt2 showed that the relative abundance of genes encoding carbonic anhydrase (CA), flagella synthesis, and organic acid production in the three groups of samples was SS>MR>LR, with LR having the highest relative abundance of iron producing carrier related functional genes. In conclusion, as the degree of weathering intensifies, the alpha diversity of the bacterial community on the surface of the tuff increases, and the community structure undergoes significant changes. Bacterial communities inhabiting rock surface might weather tuff in multiple ways simultaneously. Additionally, microbial communities inhabiting tuff surfaces with different weathering degrees had different priority utilization patterns for different carbon sources. The present study further enriched the changes in microbial community structure and function during the weathering process from tuff to red soil.

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王琪,徐佳慧,程诚,席珺,盛下放.不同风化程度凝灰岩表生细菌群落结构与功能比较[J].土壤,2024,56(3):517-524. qiwang@nuist. edu. cn, Xu Jiahui, CHENG CHENG, XI JUN, SHENG XIAFANG. Differences in Structure and Functional Potential Between the Altered Tuff and the Adjacent Soil Based on 16S rRNA gene MiSeq Sequencing-A Case Study[J]. Soils,2024,56(3):517-524

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  • 收稿日期:2023-09-05
  • 最后修改日期:2023-11-23
  • 录用日期:2023-12-01
  • 在线发布日期: 2024-07-12
  • 出版日期: