大于80年自然风干保存土壤中甲烷氧化菌的复苏与富集
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

Q931;X172

基金项目:

国家自然科学基金项目(41877062, 91751204)资助。


Resuscitation and Enrichment of Methanotrophs in Soil After >80-years of Desiccation
Author:
Affiliation:

Fund Project:

The National Natural Science Foundation of China (General Program, Key Program, Major Research Plan)eral Program, Key Program, Major Research Plan)eral Program, Key Program, Major Research Plan)

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    本研究通过对长期保存的土壤标本中甲烷氧化菌的复苏和富集培养,明确了活性甲烷氧化菌类群及其氧化甲烷潜力,同时分析了对长期干旱胁迫有较强抗逆性的甲烷氧化菌种类。研究主要针对自然风干保存83 ~ 87年的采集自福建龙岩荒地、江西南昌水田、四川华阳旱地、甘肃榆中林地、青海湟源和青海都兰牧场的6个土壤标本进行了高浓度甲烷条件下的微宇宙培养,利用气相色谱法测定了甲烷气体浓度动态变化情况以研究其甲烷氧化能力;在获得富集培养物后提取基因组DNA,利用16S rRNA和pmoA基因高通量测序分析了整体微生物和甲烷氧化菌的群落结构;同时,利用两种基因的长片段克隆测序对优势甲烷氧化菌序列进行了系统发育分析。结果显示:经过短暂的复苏,6例土壤档案样品均表现出强烈的甲烷氧化活性,前两代富集液甲烷氧化速率较慢,甲烷氧化速率仅为1.4 ~ 3.8 μg/(mL·h),而第三代富集液的甲烷氧化速率达到了4.9 ~ 7.7 μg/(mL·h)。其中,福建龙岩、江西南昌、青海都兰3个样品的富集物还可以将高浓度甲烷持续氧化到大气甲烷浓度(1.8 μL/L)以下。高通量测序结果表明,6种富集物中甲烷氧化菌在细菌总量中的占比为39% ~ 85%;pmoA功能基因分析表明,富集物中的优势甲烷氧化菌均为Methylocystis (Type IIa)。克隆序列的系统发育分析表明,富集到的Methylocystis种类和已知的Methylocystis rosea strain BRCS1亲缘关系最近,16S rRNA基因相似性为99.86%,pmoA基因相似性为99.05%。可见,Type IIa型Methylocystis属甲烷氧化菌具有强大的抗干旱胁迫的能力,经80年的风干保存后其活性仍可以迅速恢复,Type II甲烷氧化菌在未来将拥有更大的应用空间和价值。此外,长期保存的土壤档案样品仍具有较高的潜在生物活性,因此风干保存的土壤样品同样具有重要的微生物学研究价值。

    Abstract:

    In this study, the microbial recovery strategy and methane-feeding incubation were used for the long-term archived soil samples to clarify the existing methane oxidizing microbial information and methane oxidizing ability, and to explore the active methanotrophs with strong resistance to long-term drought stress. Soil microorganisms after 83-87 years of desiccation were resuscitated and incubated with high concentration of methane (20%). These archived soil samples were collected from the wasteland of Longyan City (Fujian), the paddy field of Nanchang City (Jiangxi), the dry land of Huayang County (Sichuan), the forest land of Yuzhong County (Gansu), the pasture of Huangyuan County and Dulan County (Qinghai). Methane oxidation dynamics were measured by gas chromatography. Three generations of the methane-oxidizing enrichments were obtained. Microbial genomic DNA was extracted for the third generation of the enrichments, and the community structures of total bacteria and methanotrophs were analyzed by high-throughput and clone sequencing for 16S rRNA and pmoA genes, respectively. The representative sequences of dominant methanotrophs were phylogenetically analyzed through phylogenetic tree construction. The results show that after a short resuscitation, all of the six soil samples show strong methane-oxidizing capacity. The methane oxidation rates for the first two generations of enrichment are 1.4-3.8 μg/(mL·h), while that reaches 4.9-7.7 μg/(mL·h) in the third generation. At the same time, some enrichments can also oxidize methane below the atmospheric concentration (around 1.8 μL/L). According to the results of Illumina Miseq sequencing, methanotrophs account for 39% ~ 85% of the total bacteria in the six enrichments, and Methylocystis (Type IIa methane oxidizers) is the dominant methanotrophs in the enrichment. Phylogenetic analysis of the clone-sequences finds that the enriched Methylocystis is closely relate to the known strain of Methylocystis rosea strain BRCS1, with the similarity of 16S rRNA gene and pmoA gene sequence are 99.86% and 99.05%, respectively. Therefore, Type IIa Methylocystis-like MOB has strong ability to endure drought stress after 80 years of desiccation, and its methane-oxidizing activity can resuscitate rapidly. Type II methanotrophs in the long-term archived soils deserve more exploration and application. Furthermore, the long-term archived soil samples still have high potential of biological activity.

    参考文献
    相似文献
    引证文献
引用本文

康辰光,曹伟伟,蔡元锋,陈冬峰,贾仲君.大于80年自然风干保存土壤中甲烷氧化菌的复苏与富集[J].土壤,2023,55(1):111-121. KANG Chenguang, CAO Weiwei, CAI Yuanfeng, CHEN Dongfeng, JIA Zhongjun. Resuscitation and Enrichment of Methanotrophs in Soil After >80-years of Desiccation[J]. Soils,2023,55(1):111-121

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:2022-03-03
  • 最后修改日期:2022-04-02
  • 录用日期:2022-04-06
  • 在线发布日期: 2023-03-10
  • 出版日期: